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Keto Cheddar Jalapeno Muffins – All Day I Dream About Food


Savory keto Cheddar Jalapeno Muffins make a delicious low carb snack. Pair them with your favorite keto soups and stews or even turn them into a breakfast sandwich! Grain free.

Close up shot of Keto Jalapeno Cheddar Muffins with a pat of butter melting on top.

These savory, cheesy keto muffins are super tender, moist, and flavorful. Flecks of fresh jalapeƱo give them a little kick of spice too! Serve them warm out of the oven with a bowl of keto chili for the perfect comfort food meal.

Keto Cheddar Jalapeno Muffins piled up on a wooden cutting board.

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Sometimes I forget how versatile muffins can be. You can make the classics, like Keto Blueberry Muffins, or get a little creative like Cinnamon Roll Protein Muffins. And of course, they can also be savory like these Keto Cheddar JalapeƱo Muffins. Iā€™ve had this recipe on my website since 2012, but Iā€™ve since update it to make it even lower in carbs.

Muffins are an essential part of my healthy, low carb diet and I often credit them with keeping me on track. They can be breakfast, they can be snack, and in a pinch, they can be lunch or dinner. And they are infinitely portable ā€“ just pop them in a bag and head out the door.Ā I even take them with me as low carb travel snacks.

This savory version is so tender and delicious, my family has requested them again and again!

Close up shot of Keto Jalapeno Cheddar Muffins with a pat of butter melting on top.

Why you will love this recipe

  • Buttery, cheesy flavor: These muffins are so tender, with a deliciously cheesy crust on top!
  • Kick of spice: JalapeƱos and cheddar go so well together. Of course, you can leave them out if you really donā€™t like them. T
  • Easy to make: It only takes 15 minutes to prep these muffins and get them in the oven!
  • Perfect side dish: They pair perfectly with your favorite soups and stews. Theyā€™re also delicious with Keto Pulled Pork or Chile Colorado.
  • Freezeable: Make a big batch and toss them in the freezer for any time you need an easy snack or breakfast.
  • Low Carb: They have only 6.2g carbs per muffin.

Readerā€™s Thoughts

ā€œThese are so yummy! We ended up eating them for dinner and skipped the rest of what we had planned to make. They were so good, it was hard to stop eating them!ā€ ā€” Zhenya

Ingredients you need

Top down image of ingredients needed for Cheddar Jalapeno Muffins.
  • JalapeƱos: Fresh jalapeƱos are going to give you the best flavor but pickled will do in a pinch. If you like spice, donā€™t de-seed your peppers, since that is where much of the heat is.
  • Almond flour: Fine blanched almond flour will give you the best results for ANY low carb muffin recipe. But coarser almond meal will work alright in this recipe if thatā€™s all you can find.
  • Coconut flour: These muffins are made mostly with almond flour, but I added a bit of coconut flour for consistency.
  • Shredded cheddar cheese:Ā Grate your own cheeseĀ if you want to avoid the added starch in pre-shredded cheeses.
  • Unsweetened almond milk: You can use waterĀ instead of almond milk for the added liquid, if you prefer. Or a mixture of cream and water works well too.
  • Kitchen staples: Eggs, butter, garlic powder, baking powder and salt.

Step by Step Directions

A collage of 6 images showing how to make Keto Cheddar Jalapeno Muffins.
  1. Cut the jalapeƱos: Cut 12 thin crosswise slices of jalapeƱo for the top of the muffins, and finely dice the remaining peppers.Ā 
  2. Mix the dry ingredients: Whisk together the almond flour, coconut flour, baking powder, salt, and garlic powder. Stir in 1 cup of the cheese and the chopped jalapeƱos.
  3. Add the wet ingredients: Add the eggs, butter, and almond milk and stir to combine well.
  4. Fill the muffin cups: Line a muffin pan with parchment or silicone liners. Divide the mixture among the muffins cups and top with the remaining cheese and a slice of jalapeƱo.Ā 
  5. Bake the muffins: Bake at 325ĀŗF for about 30 to 35 minutes, until the tops are set and just firm to the touch, and a tester inserted in the center comes out clean. Remove and let cool completely in the pan.Ā 
Two cheddar jalapeƱo muffins on a white plate over a brightly colored striped napkin.

Tips for Success

I always recommend silicone or parchment muffins liners, as paper can stick badly to keto muffins.

Testing for doneness:Ā Because the cheese covers the top of the muffin, it can be hard to check for doneness. I found that these needed longer than some of my other muffin recipes, and I could tell they were done mostly by touch. But inserting a tester or a toothpick in the center is your best bet if you are having trouble.

Keto flour options: Donā€™t want to use coconut flour? Try adding another 1 cup of almond flour instead. Want to use all coconut flour and no almond? Use the same amounts I use in these Keto Rhubarb Muffins, leave out all the sweetener and spices, and add the cheese and jalapeƱo listed here. I canā€™t advise exactly how long they will take to bake so please keep your eye on them in the oven.

A stack of Keto Cheddar Jalapeno Muffins on a white table with a fresh jalapeƱo.

Frequently Asked Questions

Can you eat jalapeƱos on keto?

JalapeƱos are a wonderful way to add flavor to keto recipes. A single small pepper (14g) has only about 1g of carbs, according to the USDA. This recipe uses 2 medium peppers so it only adds about 3 to 4 grams of carbs for the entire recipe of 12 muffins.

How long will these keto cheddar muffins keep?

Store these savory muffins in a covered container the fridge for up to 8 days. You can also freeze them for several months.

How many carbs are in Keto Cheddar JalapeƱo Muffins?

This keto cheddar jalapeƱo muffin recipe has 6.2g of carbs and 3.0g of fiber per serving. That comes to 3.2g net carbs per muffin.

Close up shot of keto jalapeno cheddar muffins on a white plate with one broken open to show the inside.

More recipes youā€™ll love

Close up shot of Keto Jalapeno Cheddar Muffins with a pat of butter melting on top.

Cheddar Jalapeno Muffins

Servings: 12 muffins

Prep Time 15 minutes

Cook Time 30 minutes

Total Time 45 minutes

Savory keto Cheddar Jalapeno Muffins make a delicious low carb snack. Pair them with your favorite keto soups and stews or even turn them into a breakfast sandwich! Grain free.

  • 2 medium jalapeƱos, divided
  • 2 cups (224 g) almond flour
  • 1/4 cup (30 g) coconut flour
  • 2 tsp baking powder
  • 1/2 tsp salt
  • 1/2 tsp garlic powder
  • 1 1/2 cup (169.5 g) shredded cheddar cheese, divided, (about 6 ounces)
  • 4 large eggs
  • 6 tbsp (85.21 g) butter, melted
  • 3/4 cup (177.44 ml) unsweetened almond milk
  • Preheat the oven to 325ĀŗF and line a muffin pan with parchment or silicone liners.

  • Cut 12 thin crosswise slices of jalapeƱo for the top of the muffins, and finely dice the remaining peppers.Ā 

  • In a large bowl, whisk together the almond flour, coconut flour, baking powder, salt, and garlic powder. Stir in 1 cup of the cheese and the chopped jalapeƱos.

  • Add the eggs, butter, and almond milk and stir to combine well. Divide the mixture among the muffins cups and top with the remaining cheese and a slice of jalapeno.Ā 

  • Bake about 30 to 35 minutes, until the tops are set and just firm to the touch, and a tester inserted in the center comes out clean. Remove and let cool completely in the pan.Ā 

Storage Information: Store these savory muffins in a covered container the fridge for up to 8 days. You can also freeze them for several months.

Serving: 1muffin | Calories: 251kcal | Carbohydrates: 6.2g | Protein: 10g | Fat: 20.8g | Fiber: 3g

Nutritional Disclaimer

Please note that I am not a medical or nutritional professional. I am simply recounting and sharing my own experiences on this blog. Nothing I express here should be taken as medical advice and you should consult with your doctor before starting any diet or exercise program. I provide nutritional information for my recipes simply as a courtesy to my readers. It is calculated using MacGourmet software and I remove erythritol from the final carb count and net carb count, as it does not affect my own blood glucose levels. I do my best to be as accurate as possible but you should independently calculate nutritional information on your own before relying on them. I expressly disclaim any and all liability of any kind with respect to any act or omission wholly or in part in reliance on anything contained in this website.

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